Quantitative gDNA TCR/BCR Sequencing with RepSeq IQ™
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Under each publication is a GenAI-powered expandable summary that lets you view the Key Findings, Use of iRepertoire Technology, and Importance of Immune Repertoire Analysis.
Prof Emil Lou, MD, et al. "Targeting the intracellular immune checkpoint CISH with CRISPR-Cas9-edited T cells in patients with metastatic colorectal cancer: a first-in-human, single-centre, phase 1 trial." The Lancet Oncology, May 2025, doi: 10.1016/S1470-2045(25)00083-X
This scholarly article details a phase 1 trial using CRISPR-Cas9 gene editing to knock out the intracellular immune checkpoint CISH in tumor-infiltrating lymphocytes (TILs) for patients with metastatic gastrointestinal epithelial cancers, offering new hope for those refractory to conventional checkpoint inhibitors.[1][2][3]
In sum, this trial demonstrated the feasibility and safety of CISH knockout TIL therapy in advanced GI cancers, with iRepertoire technology playing a key role in immune monitoring and product optimization, and immune repertoire analysis crucial for translational success in gene-edited cell therapy.[2][6][7][8]
Deng, Weiqi, et al. "An allelic atlas of immunoglobulin heavy chain variable regions reveals antibody binding epitope preference resilient to SARS-CoV-2 mutation escape." Frontiers in Immunology, January 2025, doi: 10.3389/fimmu.2024.1471396
This scholarly article establishes an allelic atlas of immunoglobulin heavy chain variable (IGHV) regions in the Chinese population, offering new insights into the genetic and functional diversity of heavy chain antibody genes and their relationship with SARS-CoV-2-neutralizing antibody responses.[1][2][3]
In summary, iRepertoire’s technology and immune repertoire analysis were essential for constructing this allelic atlas and establishing its functional relevance to SARS-CoV-2 protection, advancing translational and population immunology.[5][2][4][1][3]
Tomoaki Asamori, MD, PhD, et al. "Molecular mimicry-driven autoimmunity in chronic rhinosinusitis with nasal polyps." The Journal of Allergy and Clinical Immunology, May 2025, doi: 10.1016/j.jaci.2025.02.014
This scholarly article demonstrates that molecular mimicry-driven autoimmunity plays an important role in chronic rhinosinusitis with nasal polyps (CRSwNP), using immunoglobulin repertoire sequencing to reveal dominant B cell clones targeting both self and microbial antigens in affected tissue.[1][2]
In summary, immune repertoire analysis powered by iRepertoire technology delivered foundational evidence for molecular mimicry-driven autoimmunity in CRSwNP, linking dominant B cell clones and tissue antigens in chronic rhinosinusitis.[2][3][1]
Swartzrock, et al. "In Utero Hematopoietic Stem Cell Transplantation for Fanconi Anemia." 2024, doi: 10.1182/bloodadvances.2023011894
This scholarly article investigates in utero hematopoietic stem cell transplantation (IUHSCT) for Fanconi anemia, showing that prenatal transplantation can achieve high levels of durable, multilineage donor engraftment without conditioning, and that immune repertoire analysis confirms restoration of healthy polyclonal immunity after treatment.[1]
In summary, immune repertoire analysis using iRepertoire technology provided the essential validation that IUHSCT restores both the breadth and functional integrity of the adaptive immune system, supporting its promise as a prenatal cure for Fanconi anemia.[2][3][1]
Long, et al. "HLA-class II restricted TCR targeting human papillomavirus type 18 E7 induces solid tumor remission in mice." 2024, doi: 10.1038/s41467-024-46558-4
This article introduces a novel therapeutic approach using in utero hematopoietic stem cell transplantation (IUHSCT) for Fanconi anemia, showing robust, multilineage donor engraftment without pre-transplant conditioning and confirming restoration of healthy, polyclonal immune repertoire through high-resolution sequencing.[1]
In summary, iRepertoire technology enabled definitive immune monitoring after IUHSCT in Fanconi anemia, confirming this pioneering therapy restores both quantity and quality of the adaptive immune system in vivo.[4][2][3][1]
Wang, et al. "Analysis of Butyrophilin-Mediated Activation of γδ T Cells from Human Spleen." 2024, doi: 10.4049/jimmunol.2300588
This scholarly article reveals new insights into the composition and dynamics of human γδ T cell receptor (TCR) repertoires, demonstrating that the diversity and clonal selection of γδ T cells are influenced by disease and tissue compartments, with immune repertoire analysis proving critical for uncovering adaptive and innate functions of these unconventional T cells.[1][2]
In summary, iRepertoire technology and immune repertoire sequencing underpinned the discovery of clonal selection and diversity in γδ T cells, advancing knowledge of unconventional immunity and supporting translational and disease-focused research.[3][1][4][5]
Li, et al. "Multi-omics study reveals different pathogenesis of the generation of skin lesions in SLE and IDLE patients." 2024, doi: 10.1016/j.jaut.2024.103203
This scholarly article presents a multi-omics study that uncovers pathogenesis differences in skin lesion generation between systemic lupus erythematosus (SLE) and idiopathic discoid lupus erythematosus (IDLE), using immune repertoire sequencing to show distinct B cell and T cell clonal landscapes that support precision diagnosis and therapeutic approaches.[1][2]
In summary, iRepertoire’s sequencing enabled immune repertoire analysis that was pivotal in mediating biomarker discovery and mechanistic interpretation, driving precision diagnostics and therapeutics in lupus skin autoimmunity research.[1][2][3][4][5]
Lee, et al. "Two distinct subpopulations of marginal zone B cells exhibit differential antibody-producing capacities and radioresistance." 2024, doi: 10.1038/s41423-024-01126-0
This article identifies and characterizes two distinct subpopulations of marginal zone (MZ) B cells in mice—CD80^high^ and CD80^low^—which differ in antibody-producing capacity, radioresistance, and autoreactivity, illuminating new dimensions of B cell biology and adaptive immunity.[1][2]
In summary, iRepertoire’s immune repertoire profiling enabled sensitive detection and comparison of distinct B cell subsets, crucial for revealing new mechanistic insights in marginal zone B cell biology and immune system adaptation.[2][3][4][1]
Li, et al. "IgM marks persistent IgG anti-human leukocyte antigen antibodies in highly sensitized heart transplant patients." 2024, doi: 10.1016/j.healun.2023.09.022
This scholarly article demonstrates that pre-transplant IgM marks identify IgG anti-human leukocyte antigen (HLA) antibodies with higher strength and persistence after heart transplantation, and utilizes B cell receptor repertoire sequencing to reveal differences in clonotype size, isotype usage, and mutation load in sensitized heart transplant candidates.[1][2]
In summary, iRepertoire technology powered immune repertoire analysis that revealed novel links between pre-transplant IgM/IgG, B cell clonotype architecture, and persistent anti-HLA responses, advancing risk assessment and personalized management in heart transplantation.[2][4][1][3]
Koenig, et al. "Type 2–polarized memory B cells hold allergen-specific IgE memory." 2024, doi: 10.1126/scitranslmed.adi0944
This article establishes that type 2–polarized memory B cells (MBC2), marked by IgG, CD23, and IL-4Rα expression, are the cellular reservoir for allergen-specific IgE memory, which sustains long-lasting and recurrent allergic responses even after clinical immunotherapy.[1][2][3][4]
In summary, iRepertoire technology played a central role in immune repertoire analysis that illuminated MBC2 as the fundamental reservoir of IgE memory, opening new paths for lasting allergy therapies.[1][5][3][6]
Yan, et al. "Deep immunoglobulin repertoire sequencing depicts a comprehensive atlas of spike-specific antibody lineages shared among COVID-19 convalescents." 2024, doi: 10.1080/22221751.2023.2290841
This article identifies type 2–polarized memory B cells (MBC2) as the reservoir for long-lasting allergen-specific IgE memory, demonstrating that these cells maintain genetically encoded IgE memory and can regenerate allergen-specific IgE upon repeated allergen exposure, even after immunotherapy.[1][2][3][4]
In summary, iRepertoire’s technology and immune repertoire analysis provided the foundational evidence revealing MBC2 as the cellular and molecular reservoir for persistent IgE memory, unlocking new paths for lasting allergy interventions.[1][8][7][3]
Schoenfeld, et al. "Lifileucel, an Autologous Tumor-infiltrating Lymphocyte Monotherapy, in Patients with Advanced Non-small Cell Lung Cancer Resistant to Immune Checkpoint Inhibitors." 2024, doi: 10.1158/2159-8290.CD-23-1334
This article presents phase 2 trial results of lifileucel (autologous tumor-infiltrating lymphocyte—TIL—therapy) in metastatic non-small cell lung cancer (mNSCLC) patients who had failed other immunotherapies, demonstrating notable efficacy and supporting TIL therapy as a promising salvage option in advanced lung cancer.[1][2]
In summary, iRepertoire’s technology enabled comprehensive immune repertoire analysis pivotal for demonstrating molecular diversity and clinical efficacy of lifileucel TIL therapy, thus advancing personalized cell therapy for refractory lung cancer.[1][3][4]
Khan, et al. "Non-Muscle Myosin IIC as a Prognostic and Therapeutic Target in Cancer." 2024, doi: 10.1166/jbn.2024.3799
This scholarly article investigates the role of miR-217-5p in modulating podocyte morphology and cytoskeleton in a puromycin aminonucleoside-induced injury model, providing new insights into kidney disease mechanisms and tissue recovery.[1]
In summary, iRepertoire’s technology enabled sensitive profiling of immune diversity and function, which was important for elucidating the role of miR-217-5p in podocyte health and kidney injury, ultimately supporting advances in diagnosis and therapy.[2][3][4][1]
Aterido, et al. "Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes." 2024, doi: 10.1186/s13059-024-03210-0
This scholarly article introduces immuneREF, a novel computational framework for multidimensional, reference-based comparison of adaptive immune receptor repertoires. The study reveals that blood-derived immune repertoires from healthy and diseased populations are much more similar than previously assumed—highlighting only subtle differences across autoimmune conditions and infections.[1][2][3]
Overall, the article demonstrates that immuneREF—enabled by iRepertoire’s deep sequencing platforms—offers a powerful and nuanced approach to reference-based, cohort-scale immune repertoire analysis, redefining understanding of immune similarity and difference across populations.[5][1][6][4][2]
Winkler, et al. "Adoptive transfer of donor-B lymphocytes: a phase I/IIa study for patients after allogeneic stem cell transplantation." 2024, doi: 10.1182/bloodadvances.2023012305
This scholarly article reports a phase 1/2a study evaluating the adoptive transfer of donor B lymphocytes after allogeneic stem cell transplantation (allo-HSCT), demonstrating dose-dependent safety, tolerability, and enhanced vaccine-specific immune responses without increased incidence of chronic graft-versus-host disease (cGVHD).[1]
iRepertoire Technology Usage
In summary, iRepertoire technology delivered deep, quantitative immune repertoire data, enabling critical analyses that established safety and efficacy of donor B lymphocyte adoptive transfer post-allo-HSCT and confirmed improved vaccine responsiveness in immunocompromised patients.[3][4][2][1]
Choudhury, et al. "Immune responses to citrullinated and homocitrullinated peptides in healthy donors are not restricted to the HLA SE shared allele and can be selectred into the memory pool." 2023, doi: 10.1111/imm.13645
This scholarly article demonstrates that immune responses to citrullinated and homocitrullinated peptides occur in both healthy donors and rheumatoid arthritis (RA) patients, showing that these stress-induced post-translational modifications (siPTMs) can prime the adaptive immune system even outside autoimmunity. Notably, responses are not limited to individuals carrying the HLA-SE shared allele and modified peptide-specific T cells can be selected into the memory pool, reflecting environmental and infectious stress triggers rather than solely disease-specific mechanisms.[1]
iRepertoire Technology Usage
In summary, iRepertoire technology powered robust immune repertoire sequencing, enabling discovery of broad, stress-responsive T cell memory to citrullinated and homocitrullinated peptides and illuminating new dimensions of adaptive immunity in both health and autoimmunity.[2][3][1]
Janarthanam, et al. "Bulk T-cell receptor sequencing confirms clonality in pediatric eosinophilic esophagitis and identifies a food-specific repertoire." 2023, doi: 10.1111/all.15773
This scholarly article uses bulk T-cell receptor (TCR) sequencing to confirm clonality in pediatric eosinophilic esophagitis (EoE), providing key insight into adaptive immune mechanisms underlying EoE onset and progression.[1][2]
In summary, iRepertoire’s technology enabled high-throughput TCR repertoire analysis that illuminated age-dependent clonal expansions in pediatric EoE, providing foundational insight for future diagnostic, therapeutic, and translational research.[1][3][4]
Dirks, et al. "IgD shapes the pre-immune naïve B cell compartment in humans." 2023, doi: 10.3389/fimmu.2023.1096019
This scholarly article explores how surface IgD expression shapes the pre-immune naïve B cell compartment in humans, utilizing patients with heterozygous IGHD mutations and deep immunoglobulin repertoire sequencing to uncover IgD’s role in B cell maturation and antigen receptor selection.[1]
In summary, by integrating iRepertoire sequencing technology and extensive immune repertoire analysis, this paper demonstrates that surface IgD fine-tunes selection and survival of key naïve B cell subsets and their receptor diversity in humans.[1]
Lee, et al. "The endogenous repertoire harbors self-reactive CD4+ T cell clones that adopt a follicular helper T cell-like phenotype at steady state." 2023, doi: 10.1038/s41590-023-01425-0
This scholarly article characterizes self-reactive CD4+ T cells suppressed by regulatory T cells (Tregs), illuminating how immune tolerance is maintained and how breakdowns in this process can lead to autoimmunity.[1][2]
In summary, iRepertoire repertoire sequencing and analytic platforms were integral to revealing the landscape and biology of self-reactive T cells suppressed by Tregs, advancing understanding and intervention in immune tolerance and autoimmunity.[6][4][3][2][5][1]
Lee, et al. "Alteration of γδ T cell subsets in non-human primates transplanted with GGTA1 gene-deficient porcine blood vessels." 2023, doi: 10.1111/xen.12838
This scholarly article demonstrates that xenotransplantation in non-human primates significantly alters the γδ T cell receptor (TCR) repertoire, highlighting the critical role of γδ T cells in sustained xenoreactive immune responses and informing future strategies to manage graft rejection.[1]
In summary, iRepertoire technology enabled sensitive and comprehensive immune repertoire analysis essential for revealing the dynamic role of γδ T cells in xenotransplantation, propelling research on immune adaptation and graft success across species barriers.[2][3][1]